feat: Add support/config for InstanceSegmentationMask#5
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seankmartin
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left a few markers for potential questions
…ackend into feature/CC-429
…ackend into feature/CC-429
this was causing all data to be one singular label
seankmartin
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Again just leaving some notes for us :)
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just a small question, looks good overall, thanks!
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…ackend into feature/CC-429
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looking great thanks! Left a few comments
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…ackend into feature/CC-429
…g#544) * fix: provide a way to scale oriented mesh files * fix: auto compute scale correctly * refactor: pass clearer parameter to encode_mesh * refactor: pass clearer scale parameter * fix: remove test on face number increase * chore: update dependent python neuroglancer package version
* NPC-1 ingestion config. * fix formatting * add authors * add additional authors * add funding * daniel's edits + raw data * fix validation errors * fix path * fix path * fix voxel size * consistent capitalization. * fix mesh path. * add missing organism * add keyphotos
…ic vesicles from mouse brain (chanzuckerberg#538) * fix linkml dep, add missing ontology ids, add ingestion config for EMPIAR 12794 - isolated synaptic vesicles from mouse brain * small fixes * add Gctf support and fix docs * Update ingestion_tools/dataset_configs/10453.yaml Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * Update ingestion_tools/scripts/common/ctf_converter.py Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * fix 10453 config * fix 10453 config * fix 10453 config pt.3 * fix 10453 config pt.4 * fix 10453 config again * fix 10453 config * fix 10453 config again * ingestion config and ingestion validation fixes * fix ingestion validation tests * fix annotation import and metadata for 10453 * fix memory spike issue of tiltseries ingestion and also have more robust gain ingestion * linting fix * fix staging neuroglancer config https prefix bug * bugfix enqueue_runs * fix multiscale data writing and add chunking * work on zarr data chunking and writing * revert https prefix for ng, adding to separate pr * update dataset and deposition dates * add keyphotos --------- Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> Co-authored-by: uermel <uermel@czii.org>
…m viewer) (chanzuckerberg#545) * fix linkml dep, add missing ontology ids, add ingestion config for EMPIAR 12794 - isolated synaptic vesicles from mouse brain * small fixes * add Gctf support and fix docs * Update ingestion_tools/dataset_configs/10453.yaml Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * Update ingestion_tools/scripts/common/ctf_converter.py Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> * fix 10453 config * fix 10453 config * fix 10453 config pt.3 * fix 10453 config pt.4 * fix 10453 config again * fix 10453 config * fix 10453 config again * ingestion config and ingestion validation fixes * fix ingestion validation tests * fix annotation import and metadata for 10453 * fix memory spike issue of tiltseries ingestion and also have more robust gain ingestion * linting fix * fix staging neuroglancer config https prefix bug * bugfix enqueue_runs * fix multiscale data writing and add chunking * work on zarr data chunking and writing * revert https prefix for ng, adding to separate pr * add https prefix to enqueue runs / standardize dirs to fix ng config gen * auto https_prefix replacement during ng config db import * update dataset and deposition dates * add keyphotos * update config, add --import-all-metadata to ingestion * simpler dynamic url replacement during db import, use prod URLs in staging, other small fixes --------- Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com> Co-authored-by: uermel <uermel@czii.org> Co-authored-by: Utz Ermel <uermel@users.noreply.github.com>
* chore(main): release apiv2 1.14.0 * chore: Updated [staging,prod] values.yaml image tags to sha-3a64fa9 --------- Co-authored-by: czi-github-helper[bot] <95879977+czi-github-helper[bot]@users.noreply.github.com> Co-authored-by: czi-github-helper[bot] <+czi-github-helper[bot]@users.noreply.github.com>
…ackend into feature/CC-429
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